5 speed swap/engine swap

ok so im almost finished doing a 5sp/engine swap on my 95, just wondering…I drilled the whole where the clutch pedal goes but there is a electical box that was in the way that i have no idea what it is, it was not in the 5 speed car so i figure its auto just wondering if anyone has removed it or if i can without seriously fucking up alot of shit.
thanks for your time.
[/LIST]