Rochester has a couple decent ones
Bergen Auto Recyclers - Probably the best. unorganized yard, decent prices, inventory turnover is decent. easy to get to. 90-490 to exit two. 1 mile west of left.
Performance Parts 104 - Good yard in brockport just off 104 (2064 drake rd. 1/2 mile north of 104 just west of Rt 19). Decent prices. Usually get a couple newer cars in. they sell parts online so some stuff is marked for sale so you need to be careful what you pull. owner is eh, but he doesn’t work on saturdays. Guy that works saturday is cool. www.performanceparts104.com
Zerniak Auto Parts - All old stuff, watch you like a hawk. dicks. prices aren’t too bad if you find what you need, but you can’t wander yard. Don’t recommend it, but it’s there. not many imports.
J&J - North side of the city of rochester. Never been, but heard it’s decent.
Victor auto parts - about 3 miles southeast on 96 from the 90 exit. never been but drove past. Muddy, spread out and didn’t seem to have a lot of inventory. only open til noon on saturday.
there is supposed to be a small one in Williamson, but need to find out more on that.
Horseheads pickand pull - Good yard, good turnover. Did find a 300zx TT there (stripped of course) not huge on imports, but a decent selection. prices are very fair. www.horseheadspickandpull.com I think
Gary’s U-pull-it - Binghamton NY. Best one I have found. Cars turn over about ever 8-12 weeks. Prices are best I have found. www.garysupullit.com
The auburn one is good from what I hear.
There is also one in Hazelton, PA that is huge (134 acres) and the prices are awesome, but that may be far for you www.wegotused.com
and there are a couple good ones in the springfield, MA and worchester, MA area, but again, those are probably far for you.
I enjoy the junkyard incase you can’t tell.
http://standardautowreckers.net/ - I am going here saturday.